January 18th, 2012

google brain visualized

Search by Image, Recursively, Transparent PNG, #1 from kingcosmonaut3000 on Vimeo.

Very neat. Via kottke:

This is mesmerizing: using Google Image Search and starting with a transparent image, this video cycles through each subsequent related image, over 2900 in all.

It gets more interesting the longer it goes on. It’s like watching a visualisation of the neural connections of a cyborg. Or something.

January 18th, 2012

caroline prisse

Dutch artist Caroline Prisse.

December 16th, 2011

read this then take a short break


Surprisingly interesting to learn how our eyes interact with computer screens…

The human focusing system responds very well to images that have well-defined edges with good contrast between the background and any letters and symbols. The eyes react very well to most printed material that consists of solid black letters on a white background. The eyes react very differently to electronically generated characters than to printed characters on a page. Characters displayed on a computer screen or video display terminal (VDT) are made up of many, many small dots or pixels. Pixels are the result of an electron beam striking the phospor-coated rear surface of the screen. Each pixel is brightest in the center, with the brightness decreasing toward the outer edges. When a light meter with a very small aperture is passed across a pixel, with the light amplitude being charted against the horizontal location, the pixel shows a bell-shaped curve (Gaussian), while the same light amplitude graph of a printed character forms an almost perfect square wave.


The eyes have a very hard time focusing on the pixel characters. They focus on the plane of the computer screen, but cannot sustain that focus. They focus on the screen and relax to a point behind the screen, called the Resting Point of Accommodation (RPA) or dark focus. The RPA is different for every individual, but for almost everyone, it is further away than the working distance to the computer. The working distance is the distance from the computer user’s eyes to the front of the screen. So, the eyes are constantly relaxing to the RPA, and then straining to refocus on the screen. It is similar to raising the arm in a position like when volunteering for something or voting by hand and pumping the fist open and closed 40,000 times. The raised arm would get tired, let alone the hand, which symbolizes the focusing that the eyes must do in an 8 hour day. The following diagram illustrates this:

More here.

Posted in Biology | No Comments »
December 16th, 2011

love at first bite

Photo: David Paul/Mark Norman.

Neatorama has a round-up of the most bizarre mating mechanisms in the animal kingdom. That of the Anglerfish seems so impossibly beyond our reality that it’s spine-chilling and awe-inspiring at once…

Anglerfish, a deep sea fish named for the spiny appendage on its head that it uses as bait to “fish” its prey, has an unusual mating habit. As it spends its time in the bottom of the ocean, finding a mate is a problem – but the species solved this evolutionary challenge beautifully.

At first, scientists were perplexed because they’ve never caught a male anglerfish. Also, all female anglerfish have a lump on their body that looks like a parasite. Only later did scientists discover that the lump is the remain of the male fish.

The tiny male anglerfish are born without any digestive system, so once they hatch, they have to find a female quickly. When a male finds a female, he quickly bites her body and releases an enzyme that digests his skin and her body to fuse the two in an eternal embrace. The male then wastes away, becoming nothing but a lump on the female anglerfish’s body!

When the female is ready to spawn, her “male appendage” is there, ready to release sperms to fertilize her egg.

More at Neatorama

December 11th, 2011

yeti farmers/farming yetis

The yeti crab is self-sufficient beyond belief when it comes to it’s dietary requirements.

The bristles that cover the crab’s claws and body are coated in gardens of symbiotic bacteria, which derive energy from the inorganic gases of the seeps. The crab eats the bacteria, using comb-like mouthparts to harvest them from its bristles (see a video of this on our YouTube Channel).

The bacteria in K. puravida gardens are closely related to species that live in other cold seeps and hot hydrothermal vents all over the world. “It looks like the bacteria may use the seeps as stepping stones, to create this global connected population that consumes the energy coming out of seeps and vents,” says Thurber.

Thurber thinks that K. puravida waves its claws to actively farm its bacterial gardens: movements stir up the water around the bacteria, ensuring that fresh supplies of oxygen and sulphide wash over them and helping them to grow. “This ‘dance’ is extraordinary and comical,” says Van Dover. “We’ve never seen this strategy before.”

More at Nature

November 24th, 2011

nature invents stem cel treatment…

Scientists are devoting countless research hours to treatments based on embryonic stem cells, differentiating these blank-slate cells from embryos into brain cells, light-sensing retinal cells, blood cells, and more to replace damaged or destroyed tissues in the body. Now, a new study in mice shows such that nature has arrived at just such a solution, too: When a pregnant mouse has a heart attack, her fetus donates some of its stem cells to help rebuild the damaged heart tissue.

More at Discover (via reddit)

Posted in Biology | No Comments »
November 17th, 2011

life on the inside

So far the Catalogue of Life has indexed over 1,368,009 species and the latest edition features a database from Jeya Kathirithamby of Oxford University’s Department of Zoology detailing Strepsiptera, a strange order of parasitic insect.

Strepsiptera are endoparasites – they live inside their host – with almost all females spending their entire lives inside the body of other insects and males emerging as free-living adults to mate before they die, just five or six hours later.

‘The females are totally endoparasitic for their entire life history (except in one family) and all that is visible of an adult female is an extruded cephalothorax,’ Jeya tells me. ‘The female is nothing more than a “bag of eggs”, having lost all structures such as eyes, antennae, mouthparts, legs, wings and external genitalia any other insect would possess.

‘This dramatic difference between male and female makes Strepsiptera interesting model organisms for studying such aspects as mating and reproduction.’

Jeya is a world authority on these parasites where males and females can have such different lives that they even choose entirely different hosts:

‘There is a family where the males parasitize ants and the females parasitize grasshoppers, crickets or mantids. Due to the extreme sexual dimorphism and dual hosts, the sexes could not be matched until recently. We have achieved this using molecular data.’

Surprisingly, although Strepsiptera can infect and live inside the host insect for almost its entire life, the host seems unaffected and can even have its lifespan extended.

More on Physorg: Parasite lives ‘double life’

November 17th, 2011

natural expression

“Ribonucleotides are simply an expression of the fundamental principles of organic chemistry … They’re doing it unwittingly. The instructions for them to do it are inherent in the structure of the precursor materials. And if they can self-assemble so easily, perhaps they shouldn’t be viewed as complicated.”

From an article in Wired from 2009 on experiments to emulate a ‘primordial soup’.

November 11th, 2011

composers as gardeners

Brian Eno on “the composer as gardener”:

Of course, I was also familiar with Cage and his use of randomness, and new ways of making musical decisions. Or not making them. What fascinated me about these kinds of music was that they really completely moved away from that old idea of how a composer worked. It was quite clear with these pieces, for example “In C,” that the composer didn’t have a picture of the finished piece in his head when he started. What the composer had was a kind of menu, a packet of seeds, you might say. And those musical seeds, once planted, turned into the piece. And they turned into a different version of that piece every time.

So for me, this was really a new paradigm of composing. Changing the idea of the composer from somebody who stood at the top of a process and dictated precisely how it was carried out, to somebody who stood at the bottom of a process who carefully planted some rather well-selected seeds, hopefully, and watched them turn into something. What we did have, though, was cybernetics. And I became very interested in the work of a cybernetician called Stafford Beer. In fact, I became friends with him, ultimately. Stafford had written a book called The Brain Of The Firm, The Managerial Cybernetics Of Organization, which came out, I think, in ’72 or ’73. And it was a very exciting book because it was essentially about this idea, again, unspoken at the time, of bottom-up organization, of things growing from the bottom and turning into things of greater complexity.

Now, you must understand why this was surprising at the time. It’s surprising for the same reason that evolution theory is still surprising to most Americans. Which is that the concept of something intelligent coming from something simple is very hard to understand. It’s not intuitive at all. The whole shock about Darwinian evolution is that simplicity turns into complexity. It’s not obvious that that should happen.

What happened in Stafford’s work was that he was talking about organization and how things organize themselves in this new way. And there was one sentence in the book which I think I still remember, he said ‘instead of trying to organize it in full detail, you organize it only somewhat and you then rely on the dynamics of the system to take you in the direction you want to go.’ And this became my sort of motto for how I wanted composition to be.

From a transcript of a talk found here in video & audio (via 3qd)

November 11th, 2011

survival benefits of schizotypy

Researcher Dr Daniel Nettle explained: “Creative types lead a bohemian lifestyle and tend to act on more sexual impulses and opportunities, often purely for experience’s sake, than the average person would.

“It’s common to find that this sexual behaviour is tolerated. Partners, even long-term ones, are less likely to expect loyalty and fidelity from them.”

But he said these “schizotypal” personality traits could manifest themselves in negative ways.

“A person with them is likely to be prone to the shadows of full-blown mental illness such as depression and suicidal thoughts.”

He said there could be an underlying evolutionary survival benefit that would explain why creative people continued to display schizotypal character traits.

“There are positive reasons, such as their role in mate attraction and species survival, for why these characteristics are still around.”

His work in Proceedings of the Royal Society B focused on 425 men and women, including a sample of visual artists and poets and schizophrenic patients, and their history of sexual encounters since the age of 18.

BBC Health (Nov 2005)

October 30th, 2011

the most mysterious manuscript in the world

But the white whale of the code-breaking world is the Voynich manuscript. Comprising 240 lavishly illustrated vellum pages, it has defied the world’s best code breakers. Though cryptographers have long wondered if it is a hoax, it was recently dated to the early 1400s.

With a University of Chicago computer scientist, Dr. Knight this year published a detailed analysis of the manuscript that falls short of answering the hoax question, but does find some evidence that it contains patterns that match the structure of natural language.

“It’s been called the most mysterious manuscript in the world,” he said. “It’s super full of patterns, and so for somebody to have created something like that would have been a lot of work. So I feel that it’s probably a code.”

From NYtimes article about the Copiale cypher and its decryption.

From wikipedia:

The illustrations of the manuscript shed little light on the precise nature of its text but imply that the book consists of six “sections”, with different styles and subject matter. Except for the last section, which contains only text, almost every page contains at least one illustration.

The image above is fro the “biological” section of the book (“A dense continuous text interspersed with figures, mostly showing small naked women bathing in pools or tubs connected by an elaborate network of pipes, some of them clearly shaped like body organs. Some of the women wear crowns.”). The other presumed topics are herbal, astronomical, cosmological, pharmaceutical and recipes.

The manuscript has a nice wikipedia page devoted to it.

September 26th, 2011

bornean beards

Borneo is home to the bearded pig. Via Tetrapod Zoology blog

August 23rd, 2011

how to cook a mastodon

A 1998 article from the Cornell University Chronicle:

Fans of hot, spicy cuisine can thank nasty bacteria and other food-borne pathogens for the recipes that come — not so coincidentally — from countries with hot climates. Humans’ use of antimicrobial spices developed in parallel with food-spoilage microorganisms, Cornell biologists have demonstrated in a international survey of spice use in cooking.

The same chemical compounds that protect the spiciest spice plants from their natural enemies are at work today in foods from parts of the world where — before refrigeration — food-spoilage microbes were an even more serious threat to human health and survival than they are today, Jennifer Billing and Paul W. Sherman report in the March 1998 issue of the journal Quarterly Review of Biology.

“The proximate reason for spice use obviously is to enhance food palatability,” said Sherman, an evolutionary biologist and professor of neurobiology and behavior at Cornell. “But why do spices taste good? Traits that are beneficial are transmitted both culturally and genetically, and that includes taste receptors in our mouths and our taste for certain flavors. People who enjoyed food with antibacterial spices probably were healthier, especially in hot climates. They lived longer and left more offspring. And they taught their offspring and others: ‘This is how to cook a mastodon.’ We believe the ultimate reason for using spices is to kill food-borne bacteria and fungi.”

Further

August 13th, 2011

we aren’t alone in the universe, we are the universe

From Alan Watts, Out of Your Mind:

We define manliness in terms of aggression, you see, because we’re a little bit frightened as to whether or not we’re really men. And so we put on this great show of being a tough guy. It’s completely unnecessary. If you have what it takes, you don’t need to put on that show. And you don’t need to beat nature into submission. Why be hostile to nature? Because after all, you ARE a symptom of nature. You, as a human being, you grow out of this physical universe in exactly the same way an apple grows off an apple tree.

So let’s say the tree which grows apples is a tree which apples, using ‘apple’ as a verb. And a world in which human beings arrive is a world that peoples. And so the existence of people is symptomatic of the kind of universe we live in. Just as spots on somebody’s skin is symptomatic of chicken pox. Just as hair on a head is symptomatic of what’s going on in the organism. But we have been brought up by reason of our two great myths–the ceramic and the automatic–not to feel that we belong in the world. So our popular speech reflects it. You say ‘I came into this world.’ You didn’t. You came out of it. You say ‘Face facts.’ We talk about ‘encounters’ with reality, as if it was a head-on meeting of completely alien agencies.

people say there was a primordial explosion, an enormous bang billions of years ago which flung all the galaxies into space. Well let’s take that just for the sake of argument and say that was the way it happened.

It’s like you took a bottle of ink and you threw it at a wall. Smash! And all that ink spread. And in the middle, it’s dense, isn’t it? And as it gets out on the edge, the little droplets get finer and finer and make more complicated patterns, see? So in the same way, there was a big bang at the beginning of things and it spread. And you and I, sitting here in this room, as complicated human beings, are way, way out on the fringe of that bang. We are the complicated little patterns on the end of it. Very interesting. But so we define ourselves as being only that. If you think that you are only inside your skin, you define yourself as one very complicated little curlicue, way out on the edge of that explosion. Way out in space, and way out in time. Billions of years ago, you were a big bang, but now you’re a complicated human being. And then we cut ourselves off, and don’t feel that we’re still the big bang. But you are. Depends how you define yourself. You are actually–if this is the way things started, if there was a big bang in the beginning– you’re not something that’s a result of the big bang. You’re not something that is a sort of puppet on the end of the process. You are still the process. You are the big bang, the original force of the universe, coming on as whoever you are. When I meet you, I see not just what you define yourself as–Mr so-and- so, Ms so-and-so, Mrs so-and-so–I see every one of you as the primordial energy of the universe coming on at me in this particular way. I know I’m that, too. But we’ve learned to define ourselves as separate from it.

July 19th, 2011

look after this memory for me, would you?

The BBC has a story on ‘transactive memory’:

Computers and the internet are changing the nature of our memory, research in the journal Science suggests.

Psychology experiments showed that people presented with difficult questions began to think of computers.

When participants knew that facts would be available on a computer later, they had poor recall of answers but enhanced recall of where they were stored.

The researchers say the internet acts as a “transactive memory” that we depend upon to remember for us.

Lead author Betsy Sparrow of Columbia University said that transactive memory “is an idea that there are external memory sources – really storage places that exist in other people”.

“There are people who are experts in certain things and we allow them to be, [to] make them responsible for certain kinds of information,” she explained to BBC News.

Co-author of the paper Daniel Wegner, now at Harvard University, first proposed the transactive memory concept in a book chapter titled Cognitive Interdependence in Close Relationships, finding that long-term couples relied on each other to act as one another’s memory banks.

This entire blog is a sort of transactive memorybank for me. I post things I find interesting here so that I can refer back to them later.

Read more @ BBC

June 13th, 2011

seeing red

Nearly all blood is removed from meat during slaughter, which is also why you don’t see blood in raw “white meat”; only an extremely small amount of blood remains within the muscle tissue when you get it from the store.

So what is that red liquid you are seeing in red meat? Red meats, such as beef, are composed of quite a bit of water. This water, mixed with a protein called myoglobin, ends up comprising most of that red liquid.

In fact, red meat is distinguished from white meat primarily based on the levels of myoglobin in the meat. The more myoglobin, the redder the meat. Thus most animals, such as mammals, with a high amount of myoglobin, are considered “red meat”, while animals with low levels of myoglobin, like most poultry, or no myoglobin, like some sea-life, are considered “white meat”.

Myoglobin is a protein, that stores oxygen in muscle cells, very similar to its cousin, hemoglobin, that stores oxygen in red blood cells. This is necessary for muscles which need immediate oxygen for energy during frequent, continual usage. Myoglobin is highly pigmented, specifically red; so the more myoglobin, the redder the meat will look and the darker it will get when you cook it.

misconceptionjuncton via 3qd

May 31st, 2011

the simian hunch

The European Space Agency has some insights into the unglamorous practical details of daily life as an astronaut. Snip:

Once stirred, the astronauts tend to adopt a foetus-like posture as they move weightlessly about the station. Sometimes referred to unflatteringly as the “simian hunch”, it seems to be the natural human attitude in microgravity; perhaps it really is an echo of the weightless months that every growing embryo spends floating in its mother’s womb.

The crew dress as quickly as they can: no easy task when your limbs float out at odd angles. They wear disposable clothes, replacing them once every three days: there are no washing machines in space. But the ISS does have a shower. Water squirts out of the “top” to be sucked down by an air fan at the “bottom”. The shower has to be used sparingly to conserve water, but it is a luxury item that earlier space pioneers would have envied. and today’s astronauts cherish.

More on the ESA website (via reddit)

April 25th, 2011

the tabacco hornworm & bioaccumulation

The Tabacco Hornworm or Manduca Sexta. Photo: Daniel Schwen.

Some animal species exhibit bioaccumulation as a mode of defense; by consuming toxic plants or animal prey, a species may accumulate the toxin which then presents a deterrent to a potential predator. One example is the tobacco hornworm, which concentrates nicotine to a toxic level in its body as it consumes tobacco plants. Poisoning of small consumers can be passed along the food chain to affect the consumers later on.

Other compounds that are not normally considered toxic can be accumulated to toxic levels in organisms. The classic example is of Vitamin A, which becomes concentrated in carnivore livers of e.g. polar bears: as a pure carnivore that feeds on other carnivores (seals), they accumulate extremely large amounts of Vitamin A in their livers. It was known by the native peoples of the Arctic that the livers should not be eaten, but Arctic explorers have suffered Hypervitaminosis A from eating the bear livers (and there has been at least one example of similar poisoning of Antarctic explorers eating husky dog livers). One notable example of this is the expedition of Sir Douglas Mawson, where his exploration companion died from eating the liver of one of their dogs.

Bioaccumulation @ wikipedia.






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